MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-181-P1c1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-181-P1a1  Mal-Mir-181-P1b2  Mal-Mir-181-P1c2  Mal-Mir-181-P2a1  Mal-Mir-181-P2b2  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884860.1: 50205-50269 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACACAGCUGCUGUCCUGCCUGCCUCGGUGAACAUUCAACGCUGUCGGUGAGUUUGGUAUGGAUCACAUAAAAACCAUCGACCGUUGACUGUGCCCCGCGGCUCGCGCAGACCACGUCAGGAUUG
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Structure
        10          20        30        40        50        60   
GACACAGCUGCUGUCCU--| CU   U   UGA   U      CU       A    GGUAUGG 
                   GC  GCC CGG   ACA UCAACG  GUCGGUG GUUU       A
                   CG  CGG GCC   UGU AGUUGC  CAGCUAC CAAA       U
GUUAGGACUGCACCAGACG^ CU   C   CCG   C      --       -    AAUACAC 
   120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-181-P1c1_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Mal-Mir-181-P1c1_3p*
mirBase accessionNone
Sequence 
43- ACCAUCGACCGUUGACUGUGCC -65
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