MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-181-P1b2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-181-P1a1  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mal-Mir-181-P2a1  Mal-Mir-181-P2b2  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Dre-Mir-181-P1b2  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Gmo-Mir-181-P1b2  Hsa-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Xtr-Mir-181-P1b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884728.1: 1857026-1857086 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCACACAGCCCUUCCUGGUGCCCACAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUCUAACUAAAACCAUCGACCGUUGAUUGUACCCUGAGGGAUGCCACAGUCUGGUGACCAUGC
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Structure
        10         20         30        40        50        60 
GGCACACAGCCCUUCCU-    -|  A   UGA   U      CU       A    GAGCU 
                  GGUG CCC CAG   ACA UCAACG  GUCGGUG GUUU     C
                  CCGU GGG GUC   UGU AGUUGC  CAGCUAC CAAA     U
CGUACCAGUGGUCUGACA    A^  A   CCA   U      --       -    AUCAA 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-181-P1b2_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Mal-Mir-181-P1b2_3p*

mirBase accessionNone
Sequence
39- ACCAUCGACCGUUGAUUGUACC -61
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