Mir-181-P1b2

MirGeneDB ID

Mal-Mir-181-P1b2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1a1 Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mal-Mir-181-P2a1 Mal-Mir-181-P2b2 Mal-Mir-181-P2c1 Mal-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Xtr-Mir-181-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884728.1: 1857026-1857086 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCACACAGCCCUUCCUGGUGCCCACAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUCUAACUAAAACCAUCGACCGUUGAUUGUACCCUGAGGGAUGCCACAGUCUGGUGACCAUGC

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Structure

        10         20         30        40        50        60 
GGCACACAGCCCUUCCU-    -|  A   UGA   U      CU       A    GAGCU 
                  GGUG CCC CAG   ACA UCAACG  GUCGGUG GUUU     C
                  CCGU GGG GUC   UGU AGUUGC  CAGCUAC CAAA     U
CGUACCAGUGGUCUGACA    A^  A   CCA   U      --       -    AUCAA 
 .       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P1b2_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Mal-Mir-181-P1b2_3p*

mirBase accession

None

Sequence

39- ACCAUCGACCGUUGAUUGUACC -61

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