Mir-181-P2c2

MirGeneDB ID

Mal-Mir-181-P2c2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1a1 Mal-Mir-181-P1b2 Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mal-Mir-181-P2a1 Mal-Mir-181-P2b2 Mal-Mir-181-P2c1

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c Tni-Mir-181-P2c2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884989.1: 305896-305954 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUUUCUGUACCAGUGUGGGUUUCUGGUUCACAUUCAUCGCUGUCGGUGGGUUCAUGAUGCGAUCAACCUGUCGGUCGAUGAAUGACAACCGUGACCAUGCAUGGCUACGUUUCCUGA

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Structure

        10          20        30        40        50        60
AUAUUUCUGUACCAGUGUG--|   UC     CA         CUG    UG    CAUGA 
                     GGUU  UGGUU  CAUUCAUCG   UCGG  GGUU     U
                     CCAG  GCCAA  GUAAGUAGC   GGCU  CCAA     G
AGUCCUUUGCAUCGGUACGUA^   U-     CA         U--    GU    CUAGC 
       110       100         90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P2c2_5p

mirBase accession

None

Sequence

0- CACAUUCAUCGCUGUCGGUGGGUU -24

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Star sequence

Mal-Mir-181-P2c2_3p*

mirBase accession

None

Sequence

38- CCUGUCGGUCGAUGAAUGACA -59

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