MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-181b-3
Paralogues Mdo-Mir-181-P1a  Mdo-Mir-181-P1b  Mdo-Mir-181-P1c  Mdo-Mir-181-P2a  Mdo-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
3: 446461129-446461192 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-181-P2c 3: 446461129-446461192 [-] UCSC Ensembl
Mir-181-P1c 3: 446461505-446461567 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUGCCCACCUAAACCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAGAUCUGAGGAAAAACUCACCGAUGGAUGAAUGUCACUGUGGCUGGGCCAGACCUGGACCUGGAGAG
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Structure
        10        20           30        40        50        60  
UAUUGCCCACCUAAACCAAA---|      AUCA        UG            UGUGAGAU 
                       GGUCACA    ACAUUCAU  CUGUCGGUGGGU        C
                       UCGGUGU    UGUAAGUA  GGUAGCCACUCA        U
GAGAGGUCCAGGUCCAGACCGGG^      CAC-        --            AAAAGGAG 
  120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-181-P2c_5p

mirBase accessionMIMAT0004155
Sequence
0- AACAUUCAUUGCUGUCGGUGGGU -23
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Proposed targets TargetScanVert: mdo-miR-181b-5p
Star sequence

Mdo-Mir-181-P2c_3p*

mirBase accessionMIMAT0031048
Sequence
43- UCACCGAUGGAUGAAUGUCAC -64
Get sequence
Proposed targets TargetScanVert: mdo-miR-181b-3-3p