MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-181-P1a  Lch-Mir-181-P1b  Lch-Mir-181-P1c  Lch-Mir-181-P2a  Lch-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126758.1: 823305-823368 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAUGCCUGGAGUCACAAAAGUCACAAUUAACAUUCAUUGCUGUCGGUGGGUUGUGAUGUUUAAAAAGAAACUCACUGCACAAUGAAUGCCACUGUGGCUGUCCUAUAUCUGCAGUAAGACAU
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Structure
        10        20           30        40        50        60  
ACAAUGCCUGGAGUCACAAA---|      AUUAA         C  U         GUGAUGU 
                       AGUCACA     CAUUCAUUG UG CGGUGGGUU       U
                       UCGGUGU     GUAAGUAAC AC GUCACUCAA       U
UACAGAAUGACGUCUAUAUCCUG^      CACC-         -  -         AGAAAAA 
  120       110       100         90         80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-181-P2c_5p (predicted)

mirBase accessionNone
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Lch-Mir-181-P2c_3p* (predicted)

mirBase accessionNone
Sequence
42- CUCACUGCACAAUGAAUGCCAC -64
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