Mir-181-P2c

MirGeneDB ID

Mmu-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-181d

Paralogues

Mmu-Mir-181-P1a Mmu-Mir-181-P1b Mmu-Mir-181-P1c Mmu-Mir-181-P2a Mmu-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr8: 84178720-84178781 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P2c chr8: 84178720-84178781 [-] UCSC Ensembl
Mir-181-P1c chr8: 84178885-84178945 [-] UCSC Ensembl
Mir-23-P3 chr8: 84208527-84208585 [+] UCSC Ensembl
Mir-27-P3 chr8: 84208685-84208747 [+] UCSC Ensembl
Mir-24-P3 chr8: 84208839-84208896 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCUCAGGCCACAGCAAAGGUCACAAUUAACAUUCAUUGUUGUCGGUGGGUUGUGAGGAGGCAGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAAACAACACCAUCAGGG

Get precursor sequence

Structure

        10        20          30        40        50        60  
CUGCCUCAGGCCACAGCAAA--|      AUUA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       \
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GGGACUACCACAACAAACCGGG^      CAC-         G --          ACCGACG 
120       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-181-P2c_5p

mirBase accession

MIMAT0004324

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004324
TargetScanVert: mmu-miR-181d-5p
miRDB: MIMAT0004324

Star sequence

Mmu-Mir-181-P2c_3p*

mirBase accession

MIMAT0017264

Sequence

42- CCACCGGGGGAUGAAUGUCA -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-181d-3p
miRDB: MIMAT0017264