MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-181-P2c1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-181d
Paralogues Gmo-Mir-181-P1a1  Gmo-Mir-181-P1b2  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Gmo-Mir-181-P2a1  Gmo-Mir-181-P2b2  Gmo-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Ete-Mir-181-P2c  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3660: 366860-366920 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c1)
Mir-181-P2c1 GeneScaffold_3660: 366860-366920 [-] UCSC Ensembl
Mir-181-P1c1 GeneScaffold_3660: 367221-367286 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUAACCGAAAGGAGCAAGGGUCACAAUCAACAUUCAUUGCUGUCGCUGGGUUGGACUGUGUGGAAAAGCUCACUGAACAAUGAGUGCAACUGUGGCCCAGAUCUGCCUUACUCUCGUGU
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Structure
        10          20        30        40        50        60 
UGCUAACCGAAAGGAGCAA--|       AUCAA         CUG   C      GGACUG 
                     GGGUCACA     CAUUCAUUG   UCG UGGGUU      U
                     CCCGGUGU     GUGAGUAAC   AGU ACUCGA      G
UGUGCUCUCAUUCCGUCUAGA^       CAAC-         A--   C      AAAGGU 
 .       110       100        90         80          70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-181-P2c1_5p

mirBase accessionMIMAT0044234
Sequence
0- AACAUUCAUUGCUGUCGCUGGGUU -24
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Star sequence

Gmo-Mir-181-P2c1_3p* (predicted)

mirBase accessionNone
Sequence
40- CUCACUGAACAAUGAGUGCAA -61
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