MirGeneDB ID | Laf-Mir-181-P2c |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-181-P1a
Laf-Mir-181-P1b
Laf-Mir-181-P1c
Laf-Mir-181-P2a
Laf-Mir-181-P2b
|
Orthologues |
Aca-Mir-181-P2c
Ami-Mir-181-P2c
Bta-Mir-181-P2c
Cfa-Mir-181-P2c
Cja-Mir-181-P2c
Cmi-Mir-181-P2c
Cpi-Mir-181-P2c
Dno-Mir-181-P2c
Dre-Mir-181-P2c1
Dre-Mir-181-P2c2
Eca-Mir-181-P2c
Ete-Mir-181-P2c
Gmo-Mir-181-P2c1
Gmo-Mir-181-P2c2
Hsa-Mir-181-P2c
Lch-Mir-181-P2c
Loc-Mir-181-P2c
Mal-Mir-181-P2c1
Mal-Mir-181-P2c2
Mdo-Mir-181-P2c
Mml-Mir-181-P2c
Mmr-Mir-181-P2c
Mmu-Mir-181-P2c
Mun-Mir-181-P2c
Neu-Mir-181-P2c
Oan-Mir-181-P2c
Ocu-Mir-181-P2c
Pab-Mir-181-P2c
Pbv-Mir-181-P2c
Rno-Mir-181-P2c
Sha-Mir-181-P2c
Spt-Mir-181-P2c3
Spt-Mir-181-P2c4
Sto-Mir-181-P2c
Tni-Mir-181-P2c1-v1
Tni-Mir-181-P2c1-v2
Tni-Mir-181-P2c2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010053.1: 29263261-29263324 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCCCCUAGGCCACAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAAGAUGGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAGACACGGCCUGGGGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUCCCCUAGGCCACAGCGAA---| AUCA G UG GUGAAGA
GGUCACA ACAUUCAUU U UCGGUGGGUU U
UCGGUGU UGUAAGUAG G GGCCACCCAG G
UAGGGGGUCCGGCACAGACCGGG^ CAC- G -- ACCGGAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-181-P2c_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGUUGUCGGUGGGUU -24
Get sequence
|
Star sequence |
Laf-Mir-181-P2c_3p* |
mirBase accession | None |
Sequence |
42- CCCACCGGGGGAUGAAUGUCAC -64
Get sequence
|