MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-181d
Paralogues Ocu-Mir-181-P1a  Ocu-Mir-181-P1b  Ocu-Mir-181-P1c  Ocu-Mir-181-P2a  Ocu-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 VIYN01006261.1: 210921-210983 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCGCUCCCACCUCGCAAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACACAGGCCAGACCCACGGGCAGGUGAAUGUCAUUGUGGCUGGGCCAGACAGCCUGAGGGGGU
Get precursor sequence
Structure
        10        20          30        40        50        60  
CCCCGCUCCCACCUCGCAAA--|        CA        UG     G       GUGAGGA 
                      GGUCACAAU  ACAUUCAU  UUGUC GUGGGUU       C
                      UCGGUGUUA  UGUAAGUG  GACGG CACCCAG       A
UGGGGGAGUCCGACAGACCGGG^        C-        --     G       ACCGGAC 
 120       110       100         90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-181-P2c_5p
mirBase accessionMIMAT0048283
Sequence 
0- AACAUUCAUUGUUGUCGGUGGGUU -24
Get sequence
Star sequence

Ocu-Mir-181-P2c_3p*
mirBase accessionMIMAT0048284
Sequence 
42- CCCACGGGCAGGUGAAUGUCA -63
Get sequence