MirGeneDB ID | Tni-Mir-181-P2c2 |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-181-P1a1
Tni-Mir-181-P1b1
Tni-Mir-181-P1c1
Tni-Mir-181-P1c2
Tni-Mir-181-P2a1
Tni-Mir-181-P2b1
Tni-Mir-181-P2c1-v1
Tni-Mir-181-P2c1-v2
|
Orthologues |
Aca-Mir-181-P2c
Ami-Mir-181-P2c
Bta-Mir-181-P2c
Cfa-Mir-181-P2c
Cja-Mir-181-P2c
Cmi-Mir-181-P2c
Cpi-Mir-181-P2c
Dno-Mir-181-P2c
Dre-Mir-181-P2c2
Eca-Mir-181-P2c
Ete-Mir-181-P2c
Gmo-Mir-181-P2c2
Hsa-Mir-181-P2c
Laf-Mir-181-P2c
Lch-Mir-181-P2c
Loc-Mir-181-P2c
Mal-Mir-181-P2c2
Mdo-Mir-181-P2c
Mml-Mir-181-P2c
Mmr-Mir-181-P2c
Mmu-Mir-181-P2c
Mun-Mir-181-P2c
Neu-Mir-181-P2c
Oan-Mir-181-P2c
Ocu-Mir-181-P2c
Pab-Mir-181-P2c
Pbv-Mir-181-P2c
Rno-Mir-181-P2c
Sha-Mir-181-P2c
Sto-Mir-181-P2c
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 58987909-58987968 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGUUUUCCUGUAACUGCGGGACUCCGGUUCACAUUCAUCGCUGUCGGUGGGUUGGUGAUGCUGUCAGCUCGCCGGUCGAUGAAUGACCACCGUGUCCGCGCACGGCUACGCUUCUUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGUUUUCCUGUAACUG-- -| UC UCA CUG UGGUGA
CG GGAC CGGU CAUUCAUCG UCGGUGGGU U
GC CCUG GCCA GUAAGUAGC GGCCGCUCG G
GUCUUCUUCGCAUCGGCAC G^ U- CCA U-- ACUGUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-181-P2c2_5p |
mirBase accession | None |
Sequence |
0- CACAUUCAUCGCUGUCGGUGGGU -23
Get sequence
|
Star sequence |
Tni-Mir-181-P2c2_3p* |
mirBase accession | None |
Sequence |
39- UCGCCGGUCGAUGAAUGACCA -60
Get sequence
|