Mir-181-P2c

MirGeneDB ID

Bta-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-181d

Paralogues

Bta-Mir-181-P1a Bta-Mir-181-P1b Bta-Mir-181-P1c Bta-Mir-181-P2a Bta-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037334.1: 11811294-11811353 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P2c NC_037334.1: 11811294-11811353 [-] UCSC Ensembl
Mir-181-P1c NC_037334.1: 11811475-11811535 [-] UCSC Ensembl
Mir-23-P3 NC_037334.1: 11838711-11838769 [+] UCSC Ensembl
Mir-27-P3 NC_037334.1: 11838890-11838950 [+] UCSC Ensembl
Mir-24-P3 NC_037334.1: 11839043-11839102 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCCUUAGGCCACAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGACAGAGACCAGACCCACCGAGGGAUGAAUGUCACUGUGGCUGGGCCAGACACAAUCCUGGACU

Get precursor sequence

Structure

        10        20          30        40        50        60 
CUCCCUUAGGCCACAGCGAA--|      AUCA         G UG          GUGACA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU      \
                      UCGGUGU    UGUAAGUAG G  AGCCACCCAG      G
UCAGGUCCUAACACAGACCGGG^      CAC-         G --          ACCAGA 
.       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-181-P2c_5p

mirBase accession

MIMAT0009243

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-181d

Star sequence

Bta-Mir-181-P2c_3p*

mirBase accession

None

Sequence

40- CCACCGAGGGAUGAAUGUCA -60

Get sequence