Mir-181-P2c

MirGeneDB ID

Pab-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-181-P1a Pab-Mir-181-P1b Pab-Mir-181-P1c Pab-Mir-181-P2a Pab-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054699.2: 13914170-13914232 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCCCUAGGCCACAGCCAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACCGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAGACACGGCUUAAGGGG

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Structure

        10        20          30        40        50        60  
CUCCCCUAGGCCACAGCCAA--|      AUCA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       C
GGGGAAUUCGGCACAGACCGGG^      CAC-         G --          ACCGGAG 
 120       110       100         90          80        70

Deep sequencing

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3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

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Star sequence

Pab-Mir-181-P2c_3p*

mirBase accession

None

Sequence

43- CCACCGGGGGAUGAAUGUCA -63

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