MirGeneDB ID | Spt-Mir-181-P2c4 |
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Family name | MIR-181 (all species) |
Seed | ACAUUCA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-181-P1a Spt-Mir-181-P1b Spt-Mir-181-P1c Spt-Mir-181-P2a Spt-Mir-181-P2b Spt-Mir-181-P2c3 |
Orthologues | Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Eca-Mir-181-P2c Ete-Mir-181-P2c Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c |
Node of Origin (locus) | S. punctatus |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01000882.1: 188702-188764 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGUCCCUCCCAUCCUGUCAAAGUCACAGUCAACAUUCAUUGCUGUCGGUGGGUUGUGAUGCUGAAAGAGAAACUCGCUGAUCAGUGGAUGUAACUGCGGCGGCGAUGUAGCCGGCGGGGGGCGGet precursor sequence |
Structure | 10 20 30 40 50 60 GGUCCCUCCCAUCCUGUCAAA--| A CA CU GUGAUGC GUC CAGU ACAUUCAUUG GUCGGUGGGUU U CGG GUCA UGUAGGUGAC UAGUCGCUCAA G GCGGGGGGCGGCCGAUGUAGCGG^ C A- -- AGAGAAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Spt-Mir-181-P2c4_5p (predicted) |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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|
Star sequence | Spt-Mir-181-P2c4_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CUCGCUGAUCAGUGGAUGUAA -63
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