| MirGeneDB ID | Spt-Mir-181-P1a |
|---|---|
| Family name | MIR-181 (all species) |
| Seed | ACAUUCA |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-181-P1b Spt-Mir-181-P1c Spt-Mir-181-P2a Spt-Mir-181-P2b Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 |
| Orthologues | Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007511.1: 160701-160762 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGAGUUCUGUUUUUAGUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUAAAGUGAAAACCAUCGACCGUUGAUUGUACCCUCCAGCUAACCAUCGUCUUCCUUACGUCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGAGUUCUGUUUUUAGU- -| UC UGA U CU A UUGGGAUU GGUU GCU AG ACA UCAACG GUCGGUG GU \ CCAA CGA UC UGU AGUUGC CAGCUAC CA A ACUGCAUUCCUUCUGCUA U^ CC CCA U -- - AAAGUGAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-181-P1a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
|
| Star sequence | Spt-Mir-181-P1a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- ACCAUCGACCGUUGAUUGUACC -62
Get sequence
|
