Mir-181-P1a

MirGeneDB ID

Sha-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-181a-1

Paralogues

Sha-Mir-181-P1b Sha-Mir-181-P1c Sha-Mir-181-P2a Sha-Mir-181-P2b Sha-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL856772.1: 2114861-2114922 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGUUUUUUUUUUUUGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUGAAAACCAUCGACCGUUGAUUGUACCCUACAGCUAACCGACUUCAUCCUCCUUCCA

Get precursor sequence

Structure

        10         20         30        40        50        60  
GGGUUUUUUUUUUUUGA-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        A
ACCUUCCUCCUACUUCAG    U^  CA  CCA   U      --       -  AAAGUAAA 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-181-P1a_5p

mirBase accession

MIMAT0022770

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Star sequence

Sha-Mir-181-P1a_3p*

mirBase accession

MIMAT0022840

Sequence

40- ACCAUCGACCGUUGAUUGUACC -62

Get sequence