Mir-181-P1a3

MirGeneDB ID

Xla-Mir-181-P1a3

Family name

MIR-181 (all species)

Seed

CCAUCGA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-181-P1a4 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Xtr-Mir-181-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 102896328-102896389 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAACUUUGUUUGACAUGGCUACUUUAAUGAACAUUCAACGCUGUCGGUGAGUUUGGUAUCUGAAGGCAAACCAUCGAUCGUUGACUGUACAUUACGGCAAUGCCAGUAACGUCUACAUGGG

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Structure

        10             20        30        40        50        60  
AAAACUUUGUUUGACAUG-----|  ACUU     A   U      CU       A  UUGGUAUC 
                       GCU    UAAUG ACA UCAACG  GUCGGUG GU        \
                       CGG    AUUAC UGU AGUUGC  UAGCUAC CA        U
GGGUACAUCUGCAAUGACCGUAA^  C---     A   C      --       -  AACGGAAG 
120       110       100           90        80           70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Star sequence

Xla-Mir-181-P1a3_5p*

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Mature sequence

Xla-Mir-181-P1a3_3p

mirBase accession

None

Sequence

40- ACCAUCGAUCGUUGACUGUACA -62

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