Mir-181-P1b3

MirGeneDB ID

Xla-Mir-181-P1b3

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xla-Mir-181-P1b4 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Xtr-Mir-181-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030738.1: 10230165-10230231 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACUGGAGCCCCAACUUGAUGGCUUCAGAGAACAUUCAACGCUGUCGGUGAGUUUGAGAAAGUAUAAAAAUGUAAACCAUCGGCCGUUGACUGUACCCUGAGGCUUUUCACAAACAAGUGCCUGAAC

Get precursor sequence

Structure

        10         20         30        40        50        60    
CACUGGAGCCCCAACUU-  U-|       AGA   U      CU       A    GAGAAAGU 
                  GA  GGCUUCAG   ACA UCAACG  GUCGGUG GUUU        A
                  CU  UCGGAGUC   UGU AGUUGC  CGGCUAC CAAA        U
CAAGUCCGUGAACAAACA  UU^       CCA   C      --       -    UGUAAAAA 
     120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-181-P1b3_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

Get sequence

Star sequence

Xla-Mir-181-P1b3_3p*

mirBase accession

None

Sequence

45- ACCAUCGGCCGUUGACUGUACC -67

Get sequence