Mir-181-P2a3

MirGeneDB ID

Xla-Mir-181-P2a3

Family name

MIR-181 (all species)

Seed

UCGCUGA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xla-Mir-181-P2a4 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Xtr-Mir-181-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 102895249-102895309 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAAAGAAAAGUCAAUGCAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAGUUAAGAACACAAGCUCGCUGAACGAUGAAUGCAACUGUGUCCCUGAUUUAUCCAGACAAGAAGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACAAAGAAAAGUCAAUG--| A  U    AUCAA         CUG          GAGUUA 
                   CA GG CACA     CAUUCAUUG   UCGGUGGGUU      A
                   GU CC GUGU     GUAAGUAGC   AGUCGCUCGA      G
AGAAGAACAGACCUAUUUA^ C  U    CAAC-         A--          ACACAA 
 .       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Em

Star sequence

Xla-Mir-181-P2a3_5p*

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Mature sequence

Xla-Mir-181-P2a3_3p

mirBase accession

None

Sequence

40- CUCGCUGAACGAUGAAUGCAA -61

Get sequence