MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-181b-1
Paralogues Oan-Mir-181-P1a  Oan-Mir-181-P1b  Oan-Mir-181-P1c  Oan-Mir-181-P2b  Oan-Mir-181-P2c 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041731.1: 80340842-80340902 [-]
Clustered miRNAs
(< 50kb from Mir-181-P2a)
Mir-181-P2a NC_041731.1: 80340842-80340902 [-]
Mir-181-P1a NC_041731.1: 80341024-80341085 [-]
Precursor
(pre-Mir +30nt flank)
UUCUUGCAGAGUUUAACAAAGGUCCCAAUGAACAUUCAUUGCUGUCGGUGGGUUUAACUCUGAGGACAAGCUCACUGAACAAUGAAUGGAACUGUGGCUCACCUUAGGCAACCACAAUCGA
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Structure
        10        20          30         40        50        60 
UUCUUGCAGAGUUUAACAAA   C--   AUGAA-|        CUG          UAACUC 
                    GGU   CCA      CAUUCAUUG   UCGGUGGGUU      U
                    CCA   GGU      GUAAGUAAC   AGUCACUCGA      G
AGCUAACACCAACGGAUU--   CUC   GUCAAG^        A--          ACAGGA 
 .       110         100        90        80          70
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-181-P2a_5p

mirBase accessionMIMAT0006835
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Oan-Mir-181-P2a_3p*

mirBase accessionMIMAT0006836
Sequence
40- CUCACUGAACAAUGAAUGGAA -61
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