Mir-181-P2a1

MirGeneDB ID

Mal-Mir-181-P2a1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1a1 Mal-Mir-181-P1b2 Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mal-Mir-181-P2b2 Mal-Mir-181-P2c1 Mal-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xtr-Mir-181-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884719.1: 1186314-1186374 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUUCUAAAGCACAGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUGUGUGGAAGAGCUCACUGAACGAUGAAUGCAACUGUGUCCCAGAUUUCAUCUGACCGUCACA

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Structure

        10        20          30        40        50        60 
AGCUUCUAAAGCACAGCAAA--| U    AUCAA         CUG           AACUG 
                      GG CACA     CAUUCAUUG   UCGGUGGGUUU     U
                      CC GUGU     GUAAGUAGC   AGUCACUCGAG     G
ACACUGCCAGUCUACUUUAGAC^ U    CAAC-         A--           AAGGU 
 .       110       100        90         80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P2a1_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUUU -25

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Star sequence

Mal-Mir-181-P2a1_3p*

mirBase accession

None

Sequence

40- CUCACUGAACGAUGAAUGCAA -61

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