Mir-181-P1b

MirGeneDB ID

Sto-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-181-P1a Sto-Mir-181-P1c Sto-Mir-181-P2a Sto-Mir-181-P2b Sto-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01004985.1: 180750-180812 [-]

Precursor
(pre-Mir +30nt flank)

UCAGCUUUGGUUUUUCUGAUGGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUUGACUUUUCAAAUUAAACCAUCGACCGUUGGUUGUACCUUGAGGUCCAUUAUUGACAUGUUCACAAAA

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Structure

        10         20         30        40        50        60  
UCAGCUUUGGUUUUUCU-     -|     UGA   UU     CU       A  UUUGACUU 
                  GAUGG CUUCAG   ACA  CAACG  GUCGGUG GU        U
                  UUACC GGAGUU   UGU  GUUGC  CAGCUAC CA        U
AAAACACUUGUACAGUUA     U^     CCA   UG     --       -  AAUUAAAC 
 120       110       100        90          80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Sto-Mir-181-P1b_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Sto-Mir-181-P1b_3p*

mirBase accession

None

Sequence

41- ACCAUCGACCGUUGGUUGUACC -63

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