Mir-181-P1b2

MirGeneDB ID

Dre-Mir-181-P1b2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181a-2

Paralogues

Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Dre-Mir-181-P2b2 Dre-Mir-181-P2c1 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Xtr-Mir-181-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr8: 53023545-53023607 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b2)

Mir-181-P1b2 chr8: 53023545-53023607 [+] UCSC Ensembl
Mir-181-P2b2 chr8: 53023694-53023753 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCCUACAAGAUGAUCUGGUCCCUUGGUGAACAUUCAACGCUGUCGGUGAGUUUUGCGCUUCUGUAACAAACCAUCGACCGUUGACUGUACCCUGAGGGUGGCCAAAACACAGCGCAUCUCU

Get precursor sequence

Structure

        10        20          30        40        50        60  
CAUCCUACAAGAUGAUCU   --|   UG UGA   U      CU       A  UUUGCGCU 
                  GGU  CCCU  G   ACA UCAACG  GUCGGUG GU        U
                  CCG  GGGA  C   UGU AGUUGC  CAGCUAC CA        C
UCUCUACGCGACACAAAA   GU^   GU CCA   C      --       -  AACAAUGU 
 120       110       100        90          80         70