MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-181-P1a  Spt-Mir-181-P1b  Spt-Mir-181-P1c  Spt-Mir-181-P2a  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01012679.1: 9531433-9531492 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACAGCUCAAGCAUAUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUAGUUUGAAUCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGAUAGCUAGGAGGAUGCGGA
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Structure
        10         20         30        40        50        60
ACACAGCUCAAGCAUAUAA-   -|    AUCAA         CU           UUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
AGGCGUAGGAGGAUCGAUAG   A^    CAAAC         --           CUAAG 
.       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-181-P2b_5p (predicted)

mirBase accessionNone
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Spt-Mir-181-P2b_3p* (predicted)

mirBase accessionNone
Sequence
38- CUCACUGAUCAAUGAAUGCAAA -60
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