MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-181b-2
Paralogues Gga-Mir-181-P1a  Gga-Mir-181-P1b  Gga-Mir-181-P2a 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
17: 9797675-9797734 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2b)
Mir-181-P1b 17: 9796043-9796103 [+] UCSC Ensembl
Mir-181-P2b 17: 9797675-9797734 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCGGCCCAGCAUCUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUCAUUGCUAUCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGCUGGCUAAGAGGCUGCGUG
Get precursor sequence
Structure
        10         20         30        40        50        60
GCUCCGGCCCAGCAUCUAA-   -|    AUCAA         CU           UUCAU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     G
GUGCGUCGGAGAAUCGGUCG   A^    CAAAC         --           CUAUC 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-181-P2b_5p

mirBase accessionMIMAT0001151
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
Proposed targets TargetScanVert: gga-miR-181b-5p
miRDB: MIMAT0001151
Star sequence

Gga-Mir-181-P2b_3p*

mirBase accessionMIMAT0031059
Sequence
38- CUCACUGAUCAAUGAAUGCAAA -60
Get sequence
Proposed targets TargetScanVert: gga-miR-181b-2-3p
miRDB: MIMAT0031059