MirGeneDB ID | Cja-Mir-181-P2c |
---|---|
Family name | MIR-181 (all species) |
Seed | ACAUUCA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-181-P1a Cja-Mir-181-P1b Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b |
Orthologues | Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 12319229-12319292 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCCCCUAAGCCACAGCCAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACCGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAGACAUGGCUUAAGGGGAGet precursor sequence |
Structure | 10 20 30 40 50 60 CUCCCCUAAGCCACAGCCAA---| AUCA G UG GUGAGGA GGUCACA ACAUUCAUU U UCGGUGGGUU C UCGGUGU UGUAAGUAG G GGCCACCCAG C AGGGGAAUUCGGUACAGACCGGG^ CAC- G -- ACCGGAG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Cja-Mir-181-P2c_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGUUGUCGGUGGGUU -24
Get sequence
|
Star sequence | Cja-Mir-181-P2c_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CCCACCGGGGGAUGAAUGUCAC -64
Get sequence
|