Mir-181-P2c

MirGeneDB ID

Cja-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-181-P1a Cja-Mir-181-P1b Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021936.1: 12319229-12319292 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCCCUAAGCCACAGCCAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACCGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAGACAUGGCUUAAGGGGA

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Structure

        10        20           30        40        50        60  
CUCCCCUAAGCCACAGCCAA---|      AUCA         G UG          GUGAGGA 
                       GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                       UCGGUGU    UGUAAGUAG G  GGCCACCCAG       C
AGGGGAAUUCGGUACAGACCGGG^      CAC-         G --          ACCGGAG 
  120       110       100         90          80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Cja-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

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Star sequence

Cja-Mir-181-P2c_3p* (predicted)

mirBase accession

None

Sequence

42- CCCACCGGGGGAUGAAUGUCAC -64

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