Mir-23-P3

MirGeneDB ID

Bta-Mir-23-P3

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-23a

Paralogues

Bta-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037334.1: 11838711-11838769 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-181-P2c NC_037334.1: 11811294-11811353 [-] UCSC Ensembl
Mir-181-P1c NC_037334.1: 11811475-11811535 [-] UCSC Ensembl
Mir-23-P3 NC_037334.1: 11838711-11838769 [+] UCSC Ensembl
Mir-27-P3 NC_037334.1: 11838890-11838950 [+] UCSC Ensembl
Mir-24-P3 NC_037334.1: 11839043-11839102 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCCCUUGACCCUGGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCCCUGUCUCCGGGGCCGCC

Get precursor sequence

Structure

        10          20        30         40        50        
UGCCCCUUGACCCUGGU-  -  U  C   C   -|        G    G     GCUGC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CCGCCGGGGCCUCUGUCC  A  C  A   A   U^        G    A     CACUG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

Get sequence

Mature sequence

Bta-Mir-23-P3_3p

mirBase accession

MIMAT0003827

Sequence

36- AUCACAUUGCCAGGGAUUUCCAA -59

Get sequence

Proposed targets

TargetScanVert: bta-miR-23a