Mir-23-P3

MirGeneDB ID

Aca-Mir-23-P3

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-23a

Paralogues

Aca-Mir-23-P2

Orthologues

Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

2: 29158348-29158408 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-24-P3 2: 29157652-29157711 [-] UCSC Ensembl
Mir-27-P3 2: 29157937-29157998 [-] UCSC Ensembl
Mir-23-P3 2: 29158348-29158408 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUGUCUCUAUAUUGUGCCGCUGCCAGCUGGGGUUCCUGGUGAUGUGAUUUUAUUUUGGUGUUCAGAAUCACAUUGCCAGGGAUUUCCAACCAUCAGUGAGCUACCGCACCUGAGAAGUG

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Structure

        10          20        30         40        50         
AGAUGUCUCUAUAUUGU-  -     CCAGC   -|        UG         UAUUUU 
                  GC CGCUG     UGG GGUUCCUGG  AUGUGAUUU      G
                  CG GUGAC     ACC UUAGGGACC  UACACUAAG      G
GUGAAGAGUCCACGCCAU  A     UACCA   U^        GU         ACUUGU 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-23-P3_5p*

mirBase accession

MIMAT0021895

Sequence

0- GGGGUUCCUGGUGAUGUGAUUU -22

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Mature sequence

Aca-Mir-23-P3_3p

mirBase accession

MIMAT0021896

Sequence

38- AUCACAUUGCCAGGGAUUUCCAA -61

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