MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-23a
Paralogues Cfa-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr20: 48620332-48620390 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)		 Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCCCCCACCCCUGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCCCUGCCUCUGGGGCUGCC
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Structure
        10          20        30         40        50        
UGCCCCCCCACCCCUGU-  -  U  C   C   -|        G    G     GCUGC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CCGUCGGGGUCUCCGUCC  A  C  A   A   U^        G    A     CACUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-23-P3_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Cfa-Mir-23-P3_3p
mirBase accessionMIMAT0006640
Sequence 
36- AUCACAUUGCCAGGGAUUUCCAA -59
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Proposed targets TargetScanVert: cfa-miR-23a
miRDB: MIMAT0006640