MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-181c
Paralogues Cfa-Mir-181-P1a  Cfa-Mir-181-P1b  Cfa-Mir-181-P2a  Cfa-Mir-181-P2b  Cfa-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr20: 48593343-48593403 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c)
Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUGGAGAAGUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAACUGCCAUCCACCCAUCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCCCUGGAGAAGUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
ACUACCCACCUACCGUCAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-181-P1c_5p

mirBase accessionMIMAT0006635
Sequence
0- AACAUUCAACCUGUCGGUGAGUU -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-181c
miRDB: MIMAT0006635
Star sequence

Cfa-Mir-181-P1c_3p*

mirBase accessionNone
Sequence
39- ACCAUCGACCGUUGAGUGGACC -61
Get sequence