Mir-181-P1c

MirGeneDB ID

Hsa-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-181c

Paralogues

Hsa-Mir-181-P1a Hsa-Mir-181-P1b Hsa-Mir-181-P2a Hsa-Mir-181-P2b Hsa-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr19: 13874725-13874785 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-24-P3 chr19: 13836289-13836348 [-] UCSC Ensembl
Mir-27-P3 chr19: 13836447-13836508 [-] UCSC Ensembl
Mir-23-P3 chr19: 13836593-13836651 [-] UCSC Ensembl
Mir-181-P1c chr19: 13874725-13874785 [+] UCSC Ensembl
Mir-181-P2c chr19: 13874910-13874972 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCCCGGAAAAUUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCCUGAGGCCUGGAAUUGCCAUCCUCCUGCCG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GUCCCGGAAAAUUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA UCCC  GUGAGUUG  CAGCUAC CAA       C
GCCGUCCUCCUACCGUUAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-181-P1c_5p

mirBase accession

MIMAT0000258

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000258
TargetScanVert: hsa-miR-181c-5p
TargetMiner: hsa-miR-181c-5p
miRDB: MIMAT0000258

Star sequence

Hsa-Mir-181-P1c_3p*

mirBase accession

MIMAT0004559

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

Get sequence

Proposed targets

microrna.org: MIMAT0004559
TargetScanVert: hsa-miR-181c-3p
TargetMiner: hsa-miR-181c-3p
miRDB: MIMAT0004559