Mir-181-P1c

MirGeneDB ID

Eca-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-181-P1a Eca-Mir-181-P1b Eca-Mir-181-P2a Eca-Mir-181-P2b Eca-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009154.1: 46208596-46208656 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCCCAGAAAGUCGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGACAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCUCGAGGCCUGGAACUGCCGUCCACCCAGCG

Get precursor sequence

Structure

        10          20        30        40        50        60 
UCCCCCAGAAAGUCGCCAA--|     G    AA        CU       A   UGGACAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CUCC  GUGAGUUG  CAGCUAC CAA       C
GCGACCCACCUGCCGUCAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-181-P1c_5p

mirBase accession

None

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

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Star sequence

Eca-Mir-181-P1c_3p*

mirBase accession

None

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

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