MirGeneDB 3.0

MirGeneDB ID

Gja-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-181-P1a  Gja-Mir-181-P1b  Gja-Mir-181-P2a  Gja-Mir-181-P2b 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015164491.1: 6410-6471 [+]
Precursor
(pre-Mir +30nt flank)
GUCUCCCUCUCCCCCUGAAAGGCCUCGCGGAACAUUCAACGCUGUCGGUGAGUUUUGUCAGUGCGCUCAAACCAUCGACUGUUGAGUGUACCCUGUGGCUUGGCCCGAGCGACCGGCGGGAC
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Structure
        10          20        30        40        50        60  
GUCUCCCUCUCCCCCUGAA--|    U  C  A          CU       A  UUUGUCAG 
                     AGGCC CG GG ACAUUCAACG  GUCGGUG GU        \
                     UUCGG GU CC UGUGAGUUGU  CAGCUAC CA        U
CAGGGCGGCCAGCGAGCCCGG^    U  C  A          --       -  AACUCGCG 
120       110       100        90        80           70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-181-P1c_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Gja-Mir-181-P1c_3p* (predicted)

mirBase accessionNone
Sequence
40- ACCAUCGACUGUUGAGUGUACC -62
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