MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-181-P1a  Lch-Mir-181-P1b  Lch-Mir-181-P2a  Lch-Mir-181-P2b  Lch-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126758.1: 817111-817172 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGACUUCUAAGAGUGCUAAGGUUUCAGUGAACAUUCAGCGCUGUCGGUGAGUUUGGGCAGUAAGAUUAAACCAUCGACCGCUGACUGUACCCUGCAACUGCAACAGCGUCAAGGGGAGGAC
Get precursor sequence
Structure
        10        20          30        40        50        60  
AGGACUUCUAAGAGUGCUAA--|   U   UGA   U      CU       A  UUGGGCAG 
                      GGUU CAG   ACA UCAGCG  GUCGGUG GU        \
                      UCAA GUC   UGU AGUCGC  CAGCUAC CA        U
CAGGAGGGGAACUGCGACAACG^   C   CCA   C      --       -  AAUUAGAA 
120       110       100        90        80           70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-181-P1c_5p (predicted)

mirBase accessionNone
Sequence
0- AACAUUCAGCGCUGUCGGUGAGU -23
Get sequence
Star sequence

Lch-Mir-181-P1c_3p* (predicted)

mirBase accessionNone
Sequence
40- ACCAUCGACCGCUGACUGUACC -62
Get sequence