MirGeneDB ID | Laf-Mir-23-P3 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-23-P2
|
Orthologues |
Aca-Mir-23-P3
Ami-Mir-23-P3
Bta-Mir-23-P3
Cfa-Mir-23-P3
Cja-Mir-23-P3
Cmi-Mir-23-P3a
Cmi-Mir-23-P3b
Cpi-Mir-23-P3
Cpo-Mir-23-P3
Dno-Mir-23-P3
Dre-Mir-23-P3
Eca-Mir-23-P3
Ete-Mir-23-P3
Gja-Mir-23-P3
Gmo-Mir-23-P3
Hsa-Mir-23-P3
Lch-Mir-23-P3
Mal-Mir-23-P3
Mdo-Mir-23-P3
Mml-Mir-23-P3
Mmr-Mir-23-P3
Mmu-Mir-23-P3
Mun-Mir-23-P3e
Mun-Mir-23-P3f
Neu-Mir-23-P3
Oan-Mir-23-P3
Ocu-Mir-23-P3
Pab-Mir-23-P3
Pbv-Mir-23-P3
Rno-Mir-23-P3
Sha-Mir-23-P3
Sto-Mir-23-P3
Tgu-Mir-23-P3
Tni-Mir-23-P3
Xla-Mir-23-P3c
Xla-Mir-23-P3d
Xtr-Mir-23-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010053.1: 29291074-29291132 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGUGCCCCCACCCUGUGCCAUGGCCGGCGGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGGGCCCUGCCUCGGGGCCACCG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGUGCCCCCACCCUGU- AU- C C-| GG G G GCUGC
GCC GG CGG GG GUUCCUGG GAUG GAUUU C
CGG CC GCC CC UAGGGACC UUAC CUAAA U
GCCACCGGGGCUCCGUCC GUC A AA^ UU G A CACUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Laf-Mir-23-P3_5p* |
mirBase accession | None |
Sequence |
0- GGGGUUCCUGGGGAUGGGAUUU -22
Get sequence
|
Mature sequence |
Laf-Mir-23-P3_3p |
mirBase accession | None |
Sequence |
36- AUCACAUUGCCAGGGAUUUCCAA -59
Get sequence
|