MirGeneDB ID | Laf-Mir-23-P3 |
---|---|
Family name | MIR-23 (all species) |
Seed | UCACAUU |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | Laf-Mir-23-P2 |
Orthologues | Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010053.1: 29291074-29291132 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGGUGCCCCCACCCUGUGCCAUGGCCGGCGGGGGUUCCUGGGGAUGGGAUUUGCUGCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGGGCCCUGCCUCGGGGCCACCGGet precursor sequence |
Structure | 10 20 30 40 50 CGGUGCCCCCACCCUGU- AU- C C-| GG G G GCUGC GCC GG CGG GG GUUCCUGG GAUG GAUUU C CGG CC GCC CC UAGGGACC UUAC CUAAA U GCCACCGGGGCUCCGUCC GUC A AA^ UU G A CACUG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Laf-Mir-23-P3_5p* |
mirBase accession | None |
Sequence |
0- GGGGUUCCUGGGGAUGGGAUUU -22
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|
Mature sequence | Laf-Mir-23-P3_3p |
mirBase accession | None |
Sequence |
36- AUCACAUUGCCAGGGAUUUCCAA -59
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