MirGeneDB 2.1
MirGeneDB ID

Lch-Mir-23-P2

Family name MIR-23 (all species)
Seed UCACAUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-23-P1  Lch-Mir-23-P3  Lch-Mir-23-P4 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Dre-Mir-23-P2b  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Gmo-Mir-23-P2b  Hsa-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2a  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Tni-Mir-23-P2b  Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xtr-Mir-23-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH126823.1: 177079-177138 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAGGUUUCCUUUUAUGUUGUGGCUGUUUGGGUUCCUGGCAUGCUGAUUUGUGACUAAAGAUAAAAAUCACAUUGCCAGGGAUUACCACACAGCCAUACCCUUGGCCGCUGUUAUGGAA
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Structure
        10          20        30          40         50        
UGCAGGUUUCCUUUUAUGU--         U   --         -|  C      GUGACU 
                     UGUGGCUGU UGG  GUUCCUGGC AUG UGAUUU      A
                     AUACCGACA ACC  UAGGGACCG UAC ACUAAA      A
AAGGUAUUGUCGCCGGUUCCC         C   AU         U^  -      AAUAGA 
.       110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Star sequence

Lch-Mir-23-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCAUGCUGAUUU -21
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Mature sequence

Lch-Mir-23-P2_3p (predicted)
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACCAC -60
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