MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-23-P2c

Family name MIR-23 (all species)
Seed UCACAUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-23-P2d  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xla-Mir-23-P4c  Xla-Mir-23-P4d 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cja-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Eca-Mir-23-P2  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Hsa-Mir-23-P2  Laf-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmr-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Neu-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pab-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Xtr-Mir-23-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 133828882-133828941 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P2c)		 Mir-27-P2c NC_030724.1: 133829110-133829172 [+] UCSC Ensembl
Mir-24-P2c NC_030724.1: 133829567-133829625 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAACAUUUUGUAAUACCGGUGUGGCUGUUUGGGUUCCUGGCAUGCUGAUUUGUGAGUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACACAACCAUGUCCUUGGCGACUCUCAUGGAA
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Structure
        10          20        30          40         50        
CAACAUUUUGUAAUACC-- GU    C   U   --         -|  C      GUGAGU 
                   G  GUGG UGU UGG  GUUCCUGGC AUG UGAUUU      U
                   C  UACC ACA ACC  UAGGGACCG UAC ACUAAA      A
AAGGUACUCUCAGCGGUUC UG    A   C   AU         U^  -      AUUAGA 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-23-P2c_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCAUGCUGAUUU -21
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Mature sequence

Xla-Mir-23-P2c_3p
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACCAC -60
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