Mir-23-P2c

MirGeneDB ID

Xla-Mir-23-P2c

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-23-P2d Xla-Mir-23-P3c Xla-Mir-23-P3d Xla-Mir-23-P4c Xla-Mir-23-P4d

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Xtr-Mir-23-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 133828882-133828941 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P2c)

Mir-27-P2c NC_030724.1: 133829110-133829172 [+] UCSC Ensembl
Mir-24-P2c NC_030724.1: 133829567-133829625 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAACAUUUUGUAAUACCGGUGUGGCUGUUUGGGUUCCUGGCAUGCUGAUUUGUGAGUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACACAACCAUGUCCUUGGCGACUCUCAUGGAA

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Structure

        10          20        30          40         50        
CAACAUUUUGUAAUACC-- GU    C   U   --         -|  C      GUGAGU 
                   G  GUGG UGU UGG  GUUCCUGGC AUG UGAUUU      U
                   C  UACC ACA ACC  UAGGGACCG UAC ACUAAA      A
AAGGUACUCUCAGCGGUUC UG    A   C   AU         U^  -      AUUAGA 
.       110       100        90        80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Star sequence

Xla-Mir-23-P2c_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCAUGCUGAUUU -21

Get sequence

Mature sequence

Xla-Mir-23-P2c_3p

mirBase accession

None

Sequence

37- AUCACAUUGCCAGGGAUUACCAC -60

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