Mir-23-P2

MirGeneDB ID

Gga-Mir-23-P2

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-23b

Paralogues

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

Z: 41660640-41660699 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P2)

Mir-23-P2 Z: 41660640-41660699 [+] UCSC Ensembl
Mir-27-P2 Z: 41660880-41660942 [+] UCSC Ensembl
Mir-24-P2 Z: 41661400-41661459 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACAGCUUUCUUUUAAUGUUGUGGCUGUUUGGGUUCCUGGCAUGAUGAUUUGUGAGUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACAUAGCCAUGACCGCAGCUGCUACUCUGAAA

Get precursor sequence

Structure

        10          20        30          40         50        
CACAGCUUUCUUUUAAU--  UG       U   --         -|  A      GUGAGU 
                   GU  UGGCUGU UGG  GUUCCUGGC AUG UGAUUU      U
                   CA  ACCGAUA ACC  UAGGGACCG UAC ACUAAA      A
AAAGUCUCAUCGUCGACGC  GU       C   AU         U^  -      AUUAGA 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-23-P2_5p*

mirBase accession

MIMAT0026546

Sequence

0- GGGUUCCUGGCAUGAUGAUUU -21

Get sequence

Proposed targets

TargetScanVert: gga-miR-23b-5p
miRDB: MIMAT0026546

Mature sequence

Gga-Mir-23-P2_3p

mirBase accession

MIMAT0001186

Sequence

37- AUCACAUUGCCAGGGAUUACCAC -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-23b-3p
miRDB: MIMAT0001186