MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-23-P2

Family name MIR-23 (all species)
Seed UCACAUU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-23-P1  Sto-Mir-23-P3  Sto-Mir-23-P4 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cja-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Dre-Mir-23-P2b  Eca-Mir-23-P2  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Gmo-Mir-23-P2b  Hsa-Mir-23-P2  Laf-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2a  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmr-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Neu-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pab-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Tgu-Mir-23-P2  Tni-Mir-23-P2b  Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xtr-Mir-23-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01002700.1: 246394-246453 [-]
Precursor
(pre-Mir +30nt flank)
UGCAAAUUUCCUUUCAUGUUGUGGCCGAGUGGGUUCCUGGCAUACUGAUUUGUGACAUGAGAUAAAAAUCACAUUGCCAGGGAUUACCACAUAGUCACUGCCUUGACUGCUGUUCUGGAA
Get precursor sequence
Structure
        10          20        30          40        50        
UGCAAAUUUCCUUUCAU--  U     CGA    --|         UAC      GUGACA 
                   GU GUGGC   GUGG  GUUCCUGGCA   UGAUUU      U
                   CG CACUG   CACC  UAGGGACCGU   ACUAAA      G
AAGGUCUUGUCGUCAGUUC  U     AUA    AU^         UAC      AAUAGA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Sto-Mir-23-P2_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCAUACUGAUUU -21
Get sequence
Mature sequence

Sto-Mir-23-P2_3p
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACCAC -60
Get sequence