MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-24-P1

Family name MIR-24 (all species)
Seed GGCUCAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-24-P2  Lch-Mir-24-P3  Lch-Mir-24-P4 
Orthologues Dre-Mir-24-P1  Gmo-Mir-24-P1  Loc-Mir-24-P1  Pma-Mir-24-o1  Sto-Mir-24-P1  Tni-Mir-24-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126762.1: 1801884-1801943 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGACAUCACGGGGAUCGGGUUUCAGCUCCCGUGCCUACUGAGCUGAUAACAGUUCUUAUCCGUAUUACUGGCUCAGUUCAGCAGGAACUGGAGUUGGGCCCCUCCGCUCAUGUCCCUGGG
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Structure
        10          20        30        40        50          
GGACAUCACGGGGAUCG--| UU        C  G   A         UAA    UCUUAU 
                   GG  UCAGCUCC GU CCU CUGAGCUGA   CAGU      \
                   CC  GGUUGAGG CA GGA GACUUGACU   GUCA      C
GGGUCCCUGUACUCGCCUC^ CG        U  A   C         CG-    UUAUGC 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-24-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUAACAGU -23
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Mature sequence

Lch-Mir-24-P1_3p (predicted)

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACUG -60
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