MirGeneDB ID | Lch-Mir-24-P1 |
---|---|
Family name | MIR-24 (all species) |
Seed | GGCUCAG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-24-P2 Lch-Mir-24-P3 Lch-Mir-24-P4 |
Orthologues | Dre-Mir-24-P1 Gmo-Mir-24-P1 Loc-Mir-24-P1 Pma-Mir-24-o1 Sto-Mir-24-P1 Tni-Mir-24-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126762.1: 1801884-1801943 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GGACAUCACGGGGAUCGGGUUUCAGCUCCCGUGCCUACUGAGCUGAUAACAGUUCUUAUCCGUAUUACUGGCUCAGUUCAGCAGGAACUGGAGUUGGGCCCCUCCGCUCAUGUCCCUGGGGet precursor sequence |
Structure | 10 20 30 40 50 GGACAUCACGGGGAUCG--| UU C G A UAA UCUUAU GG UCAGCUCC GU CCU CUGAGCUGA CAGU \ CC GGUUGAGG CA GGA GACUUGACU GUCA C GGGUCCCUGUACUCGCCUC^ CG U A C CG- UUAUGC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-24-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAUAACAGU -23
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|
Mature sequence | Lch-Mir-24-P1_3p (predicted) |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACUG -60
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|