MirGeneDB ID | Tni-Mir-24-P1 |
Family name |
MIR-24 (all species) |
Seed |
GGCUCAG |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-24-P2b
Tni-Mir-24-P3
Tni-Mir-24-P4a
Tni-Mir-24-P4b
|
Orthologues |
Dre-Mir-24-P1
Gmo-Mir-24-P1
Lch-Mir-24-P1
Loc-Mir-24-P1
Pma-Mir-24-o1
Sto-Mir-24-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15_random: 3093022-3093080 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCGCUGCCGGUGUUUGGGCUCAACCUCCUGUGCCUACUGAGCUGAAAACAGUCGGAUAUCAGACACUGGCUCAGUUCAGCAGGAACCGGAGUUAGGCCUUCUAGAGACAGCACCCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCGCUGCCGGUGUUUG---| UC C U G A AAA CGGAU
GGC AAC UCC GU CCU CUGAGCUGA CAGU A
CCG UUG AGG CA GGA GACUUGACU GUCA U
GGGCCCACGACAGAGAUCUU^ GA - C A C CG- CAGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on the 5p arm. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tni-Mir-24-P1_5p* |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAAAACAGU -23
Get sequence
|
Mature sequence |
Tni-Mir-24-P1_3p |
mirBase accession | None |
Sequence |
37- UGGCUCAGUUCAGCAGGAACCG -59
Get sequence
|