MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-24-P4

Family name MIR-24 (all species)
Seed GGCUCAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-24-P1  Lch-Mir-24-P2  Lch-Mir-24-P3 
Orthologues Dre-Mir-24-P4a  Gmo-Mir-24-P4a  Gmo-Mir-24-P4b  Loc-Mir-24-P4  Mal-Mir-24-P4a  Mal-Mir-24-P4b  Sto-Mir-24-P4  Tni-Mir-24-P4a  Tni-Mir-24-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127091.1: 1152354-1152413 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGAACUUUUGAAUUGGCAGAGAUCUCCUGUGCCUACUGAGCUGAUAUCAGUGUGUAUGGAAAAAGCUGGCUCAGUUCAGCAGGAACAGGAGUCCAGCCUGACUGCCCUUGGAAGCCUC
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Structure
        10        20           30        40        50          
GGAGAACUUUUGAAUUGG   A---| U       G   A         UA    UGUGUAU 
                  CAG    GA CUCCUGU CCU CUGAGCUGA  UCAG       \
                  GUC    CU GAGGACA GGA GACUUGACU  GGUC       G
CUCCGAAGGUUCCCGUCA   CGAC^ -       A   C         C-    GAAAAAG 
.       110       100         90        80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Lch-Mir-24-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUAUCAG -22
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Mature sequence

Lch-Mir-24-P4_3p (predicted)

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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