MirGeneDB ID | Lch-Mir-24-P4 |
---|---|
Family name | MIR-24 (all species) |
Seed | GGCUCAG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-24-P1 Lch-Mir-24-P2 Lch-Mir-24-P3 |
Orthologues | Dre-Mir-24-P4a Gmo-Mir-24-P4a Gmo-Mir-24-P4b Loc-Mir-24-P4 Mal-Mir-24-P4a Mal-Mir-24-P4b Sto-Mir-24-P4 Tni-Mir-24-P4a Tni-Mir-24-P4b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH127091.1: 1152354-1152413 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GGAGAACUUUUGAAUUGGCAGAGAUCUCCUGUGCCUACUGAGCUGAUAUCAGUGUGUAUGGAAAAAGCUGGCUCAGUUCAGCAGGAACAGGAGUCCAGCCUGACUGCCCUUGGAAGCCUCGet precursor sequence |
Structure | 10 20 30 40 50 GGAGAACUUUUGAAUUGG A---| U G A UA UGUGUAU CAG GA CUCCUGU CCU CUGAGCUGA UCAG \ GUC CU GAGGACA GGA GACUUGACU GGUC G CUCCGAAGGUUCCCGUCA CGAC^ - A C C- GAAAAAG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Star sequence | Lch-Mir-24-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUGCCUACUGAGCUGAUAUCAG -22
Get sequence
|
Mature sequence | Lch-Mir-24-P4_3p (predicted) |
mirBase accession | None |
Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
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|