| MirGeneDB ID | Mal-Mir-24-P4b |
|---|
| Family name |
MIR-24 (all species) |
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| Seed |
UACCUAC |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-24-P4a
|
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| Orthologues |
Gmo-Mir-24-P4b
Lch-Mir-24-P4
Loc-Mir-24-P4
Sto-Mir-24-P4
Tni-Mir-24-P4b
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884702.1: 2270202-2270261 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAAUGAGGCAUUUUGGGGUUGUGUACUCGUGUACCUACUGAACUGGAUUCGGUGUGUUUUUGCAGAACUGGCUCAGUCCAGCAGGAACAAGAGUGACACCUAUUAAGAUACCAUCAGUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUGAGGCAUUUUGGGGUU- -| G A A A AU GUGUUU
GUG UACUC UGU CCU CUG ACUGG UCGGU \
CAC GUGAG ACA GGA GAC UGACU GGUCA U
CGUGACUACCAUAGAAUUAUC A^ A A C C C- AGACGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
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| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Mal-Mir-24-P4b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUACCUACUGAACUGGAUUCGGU -23
Get sequence
|
|---|
| Star sequence |
Mal-Mir-24-P4b_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UGGCUCAGUCCAGCAGGAACAA -60
Get sequence
|
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