MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-24-P4b

Family name MIR-24 (all species)
Seed UACCUAC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-24-P4a 
Orthologues Gmo-Mir-24-P4b  Lch-Mir-24-P4  Loc-Mir-24-P4  Sto-Mir-24-P4  Tni-Mir-24-P4b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884702.1: 2270202-2270261 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUGAGGCAUUUUGGGGUUGUGUACUCGUGUACCUACUGAACUGGAUUCGGUGUGUUUUUGCAGAACUGGCUCAGUCCAGCAGGAACAAGAGUGACACCUAUUAAGAUACCAUCAGUGC
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Structure
        10        20          30        40        50          
UAAUGAGGCAUUUUGGGGUU-   -|    G   A   A   A     AU     GUGUUU 
                     GUG UACUC UGU CCU CUG ACUGG  UCGGU      \
                     CAC GUGAG ACA GGA GAC UGACU  GGUCA      U
CGUGACUACCAUAGAAUUAUC   A^    A   A   C   C     C-     AGACGU 
.       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-24-P4b_5p

mirBase accessionNone
Sequence
0- GUACCUACUGAACUGGAUUCGGU -23
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Star sequence

Mal-Mir-24-P4b_3p*

mirBase accessionNone
Sequence
38- UGGCUCAGUCCAGCAGGAACAA -60
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