MirGeneDB ID | Loc-Mir-23-P4 |
Family name |
MIR-23 (all species) |
Seed |
UCACAUU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-23-P1
Loc-Mir-23-P2
|
Orthologues |
Cmi-Mir-23-P4
Dre-Mir-23-P4a
Gmo-Mir-23-P4a
Lch-Mir-23-P4
Mal-Mir-23-P4a
Sto-Mir-23-P4
Tni-Mir-23-P4a
Xla-Mir-23-P4c
Xla-Mir-23-P4d
Xtr-Mir-23-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG19: 5779627-5779689 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUUAACCACUAGUCUGGCUGUAUCGGAGAGGGUUCCUGGCACCGUGAUUUGAUGCAAAAACAGAAACCAAAAUCACAUUGCCAGGGAUUUCCACUCUGUUACAGGUUGCUCCUUCGGGCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUUAACCACUAGUCUGG U A --| CC GAUGCAAAA
CUGUA CGGAG GG GUUCCUGGCA GUGAUUU \
GACAU GUCUC CC UAGGGACCGU CACUAAA A
UGUCGGGCUUCCUCGUUG U A UU^ UA ACCAAAGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-23-P4_5p* |
mirBase accession | None |
Sequence |
0- GGGUUCCUGGCACCGUGAUUU -21
Get sequence
|
Mature sequence |
Loc-Mir-23-P4_3p |
mirBase accession | None |
Sequence |
42- AUCACAUUGCCAGGGAUUUCC -63
Get sequence
|