MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-30-P1o1

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-30a
Paralogues Dre-Mir-30-P1a  Dre-Mir-30-P1b  Dre-Mir-30-P1d  Dre-Mir-30-P2a  Dre-Mir-30-P2b  Dre-Mir-30-P2d 
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr19: 4737589-4737653 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUGUGUGUUCCAAUGGCUCCUUGCAGUUGUAAACAUUCCCGACUGGAAGUUGUAAUGCAGAAAAUCUCAGCUUUCAGUCUGAUGUUUGCUGCUACUGGUGGCCUCCAGCAACUGUCUGUCUG
Get precursor sequence
Structure
        10          20        30        40        50        60   
UGUGUGUGUGUUCCAAU--|  UC  UGC   U         CCC           GUAAUGCA 
                   GGC  CU   AGU GUAAACAUU   GACUGGAAGUU        \
                   CCG  GG   UCG CGUUUGUAG   CUGACUUUCGA        G
GUCUGUCUGUCAACGACCU^  GU  UCA   U         U--           CUCUAAAA 
   120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P1o1_5p

mirBase accessionMIMAT0001803
Sequence
0- UGUAAACAUUCCCGACUGGAAGUU -24
Get sequence
Proposed targets TargetScanFish: dre-miR-30a
Star sequence

Dre-Mir-30-P1o1_3p*

mirBase accessionMIMAT0031951
Sequence
43- CUUUCAGUCUGAUGUUUGCUGC -65
Get sequence