Mir-30-P1a

MirGeneDB ID

Dre-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-30d

Paralogues

Dre-Mir-30-P1b Dre-Mir-30-P1d Dre-Mir-30-P1o1 Dre-Mir-30-P2a Dre-Mir-30-P2b Dre-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr16: 25341450-25341514 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P1a chr16: 25341450-25341514 [+] UCSC Ensembl
Mir-30-P2a chr16: 25341739-25341799 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUAUAUGGGUAUAACUGGUUGUUCAUGCCUGUAAACAUCCCCGACUGGAAGCUGUGCUACGCGGAAAACGAGCUUUCAGUUGGAUGUUUGCUGUCAUCGUCCAGUUCUGUCGCCUUGUAUUACU

Get precursor sequence

Structure

        10             20        30        40        50        60   
UGUAUAUGGGUAUAACU-----| U  UUC   CCU          CC           GUGCUACG 
                      GG UG   AUG   GUAAACAUCC  GACUGGAAGCU        \
                      CC GC   UAC   CGUUUGUAGG  UUGACUUUCGA        C
UCAUUAUGUUCCGCUGUCUUGA^ U  ---   UGU          --           GCAAAAGG 
   120       110       100           90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-30-P1a_5p

mirBase accession

MIMAT0001806

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanFish: dre-miR-30d

Star sequence

Dre-Mir-30-P1a_3p*

mirBase accession

None

Sequence

43- CUUUCAGUUGGAUGUUUGCUGU -65

Get sequence