Mir-30-P1a

MirGeneDB ID

Eca-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30d

Paralogues

Eca-Mir-30-P1b Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009156.1: 77319230-77319291 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Mir-30-P1a CM009156.1: 77319230-77319291 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUACUUUGUUGUUCAGAAAGUCUGUGGUUGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCUGCGACCGGCUGUUCACAGACGUCAUUUUGGUG

Get precursor sequence

Structure

        10         20         30        40        50        60 
UGUUACUUUGUUGUUCA-   -|   U  G  U         CCC           GUGAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
GUGGUUUUACUGCAGACA   G^   C  G  U         A--           AUCGGU 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-30-P1a_5p

mirBase accession

MIMAT0013006

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Eca-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence