Mir-30-P1a

MirGeneDB ID

Eca-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30d

Paralogues

Eca-Mir-30-P1b Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009156.1: 77319230-77319291 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Mir-30-P1a CM009156.1: 77319230-77319291 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUACUUUGUUGUUCAGAAAGUCUGUGGUUGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCUGCGACCGGCUGUUCACAGACGUCAUUUUGGUG

Get precursor sequence

Structure

        10         20         30        40        50        60 
UGUUACUUUGUUGUUCA-   -|   U  G  U         CCC           GUGAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
GUGGUUUUACUGCAGACA   G^   C  G  U         A--           AUCGGU 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-30-P1a_5p

mirBase accession

MIMAT0013006

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Eca-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence