MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-30-P1b  Gja-Mir-30-P1d  Gja-Mir-30-P2a  Gja-Mir-30-P2b  Gja-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015176490.1: 310743-310799 [-]
Precursor
(pre-Mir +30nt flank)
UCUCGUUCCAGAUGCACGGUAGUCUGUAGUUGUAAACAUCCCCGACUGGAAGCUGGAAACCGUAGCUUUCAGUCAGAUGUUUGCUGCCACCGGCUAUUAAUAAACAACACUGGAAGA
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Structure
        10          20        30        40        50         
UCUCGUUCCAGAUGCAC--|      U  A  U         CCC           GGAA 
                   GGUAGUC GU GU GUAAACAUC   GACUGGAAGCU    \
                   UUAUCGG CA CG CGUUUGUAG   CUGACUUUCGA    A
AGAAGGUCACAACAAAUAA^      C  C  U         A--           UGCC 
     110       100        90        80          70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-30-P1a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Gja-Mir-30-P1a_3p*
mirBase accessionNone
Sequence 
35- CUUUCAGUCAGAUGUUUGCUGC -57
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