Mir-30-P1a

MirGeneDB ID

Mun-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-30-P1b Mun-Mir-30-P1d Mun-Mir-30-P2a Mun-Mir-30-P2b Mun-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

30-P1a_LR594632.1:595629037-595629176: 40-101 [-]

Precursor
(pre-Mir +30nt flank)

GUCGAGUUAAGAUUUAUGCUAGUCUGUAACUGUAAACAUCCCCGACUGGAAGCUGUAUGUCACAUUCUAGCUUUCAGUCAGAUGUUUGCUGCUACUAGCCAUGCAGAACCUGCAUCUCCAGA

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Structure

        10              20        30        40        50        60 
GUCGAGUUAAGAUUUAU------|     CU   ACU         CCC           GUAUGU 
                       GCUAGU  GUA   GUAAACAUC   GACUGGAAGCU      C
                       CGAUCA  CGU   CGUUUGUAG   CUGACUUUCGA      A
AGACCUCUACGUCCAAGACGUAC^     U-   ---         A--           UCUUAC 
120       110       100         90           80          70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Star sequence

Mun-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

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