Mir-30-P1a

MirGeneDB ID

Neu-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-30-P1d Neu-Mir-30-P2a Neu-Mir-30-P2b Neu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051816.1: 104485511-104485572 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUUGUAAUUGUCAACGAAAGUCUGUCGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAAUCACAAACGUCAUCACGUUA

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Structure

        10        20          30        40        50        60 
AGUUUGUAAUUGUCAACGAA--|   U  C  U         CCC           GUAAGA 
                      AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                      UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUUGCACUACUGCAAACACUAA^   C  U  U         A--           ACCGAC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Star sequence

Neu-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

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