| MirGeneDB ID | Cja-Mir-30-P1a |
|---|---|
| Family name | MIR-30 (all species) |
| Seed | GUAAACA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-30-P1b Cja-Mir-30-P1d Cja-Mir-30-P2a Cja-Mir-30-P2b Cja-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021930.1: 60921023-60921084 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGUUAAUUUCUUGUUCAGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGAUUCAACUAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAUUCACAGACAUCCUCUUGAUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGUUAAUUUCUUGUUCA- -| U U U CCC GUAAGA GAA AGUC GU GU GUAAACAUC GACUGGAAGCU U CUU UCGG CA CG CGUUUGUAG CUGACUUUCGA U AUAGUUCUCCUACAGACA A^ C U U A-- AUCAAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-30-P1a_5p |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
|
| Star sequence | Cja-Mir-30-P1a_3p* |
| mirBase accession | None |
| Sequence |
40- CUUUCAGUCAGAUGUUUGCUGC -62
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|
