Mir-30-P1a

MirGeneDB ID

Cja-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-30-P1b Cja-Mir-30-P1d Cja-Mir-30-P2a Cja-Mir-30-P2b Cja-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021930.1: 60921023-60921084 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUAAUUUCUUGUUCAGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGAUUCAACUAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAUUCACAGACAUCCUCUUGAUA

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Structure

        10         20         30        40        50        60 
UGUUAAUUUCUUGUUCA-   -|   U  U  U         CCC           GUAAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      U
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      U
AUAGUUCUCCUACAGACA   A^   C  U  U         A--           AUCAAC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Star sequence

Cja-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

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